Monthly Archives: August 2022

Self-supervised denoising of calcium imaging data

This blog post is about algorithms based on deep networks to denoise raw calcium imaging movies. More specifically, I will write about the difficulties to interprete their outputs, and on how to address these limitations in future work. I will … Continue reading

Posted in Calcium Imaging, Data analysis, Imaging, machine learning, Microscopy, Neuronal activity, Review, zebrafish | Tagged , , , , | Leave a comment

Video introduction to CASCADE

A video with tutorial on CASCADE, a supervised method to infer spike rates from calcium imaging data. Continue reading

Posted in Calcium Imaging, Data analysis, electrophysiology, Imaging, machine learning, Microscopy, Neuronal activity | Tagged , , , , | Leave a comment