Monthly Archives: August 2022

Self-supervised denoising of calcium imaging data

Posted on August 23, 2022 by P.T.R. Rupprecht

This blog post is about algorithms based on deep networks to denoise raw calcium imaging movies. More specifically, I will write about the difficulties to interprete their outputs, and on how to address these limitations in future work. I will … Continue reading →

Posted in Calcium Imaging, Data analysis, Imaging, machine learning, Microscopy, Neuronal activity, Review, zebrafish | Tagged , , , , | 2 Comments

Video introduction to CASCADE

Posted on August 2, 2022 by P.T.R. Rupprecht

A video with tutorial on CASCADE, a supervised method to infer spike rates from calcium imaging data. Continue reading →

Posted in Calcium Imaging, Data analysis, electrophysiology, Imaging, machine learning, Microscopy, Neuronal activity | Tagged , , , , | Leave a comment