Category Archives: Review

How to use Google Scholar as a neuroscientist

Google Scholar is a search engine for scientific publications. There are alternatives like PubMed (not a search engine but a database, often used in the medical field), Semantic Scholar (also a database, but with richer annotations), Citation Gecko (to discover … Continue reading

Posted in neuroscience, Review, Reviews, writing | Tagged , , | Leave a comment

There is no recipe for discoveries

There is no recipe for discoveries, and there is no cookbook on how to publish a paper. But at least there are typical events and routes that are often encountered. Here, I’d like to share the trajectory of a study … Continue reading

Posted in Calcium Imaging, Data analysis, hippocampus, Imaging, machine learning, Microscopy, neuroscience, Review | Tagged , , | 8 Comments

Annual report of my intuition about the brain (2023)

How does the brain work and how can we understand it? To view this big question from a broad perspective, I’m reporting some ideas about the brain that marked me most during the past twelve months and that, on the … Continue reading

Posted in hippocampus, Neuronal activity, Review | Tagged , , | 6 Comments

Annual report of my intuition about the brain (2022)

How does the brain work and how can we understand it? To view this big question from a broad perspective at the end of each year, I’m reporting some of the thoughts about the brain that marked me most during … Continue reading

Posted in electrophysiology, Network analysis, Neuronal activity, Review, Reviews | Tagged , , | 8 Comments

Self-supervised denoising of calcium imaging data

This blog post is about algorithms based on deep networks to denoise raw calcium imaging movies. More specifically, I will write about the difficulties to interprete their outputs, and on how to address these limitations in future work. I will … Continue reading

Posted in Calcium Imaging, Data analysis, Imaging, machine learning, Microscopy, Neuronal activity, Review, zebrafish | Tagged , , , , | 3 Comments

Public peer review files

Peer-review is probably the most obscure part of the publication of scientific results. In this blog post, I would like to make the point that the best way to learn about it – except by being directly involved – is … Continue reading

Posted in Calcium Imaging, Imaging, machine learning, Microscopy, Neuronal activity, Review | Tagged , , , | 2 Comments

Annual report of my intuition about the brain (2021)

How does the brain work and how can we understand it? I want to make it a habit to report some of the thoughts about the brain that marked me most during the past twelve month at the end of … Continue reading

Posted in machine learning, Network analysis, Review | Tagged , , , | 8 Comments

Annual report of my intuition about the brain (2019)

How does the brain work and how can we understand it? I want to make it a habit to report some of the thoughts about the brain that marked me most during the past twelve month at the end of … Continue reading

Posted in Calcium Imaging, Data analysis, electrophysiology, machine learning, Network analysis, Neuronal activity, Review | Tagged , , , , , , , | 9 Comments