Category Archives: Brain machine interface

I never meant to study the brainstem

Posted on September 25, 2025 by P.T.R. Rupprecht

I was recently invited to contribute a guest post on Substack by Vijay Iyer – some years ago one of the main developers of ScanImage in the lab of Karel Svoboda, and more recently a strong advocate for ME/CFS awareness … Continue reading →

Posted in Astrocytes, Brain machine interface, Calcium Imaging, hippocampus, Locus coeruleus, Microscopy, writing | Tagged , , , , , , , | Leave a comment

Online spike inference with GCaMP8

Posted on March 24, 2025 by P.T.R. Rupprecht

Calcium imaging is used to record the activity of neurons in living animals. Often, these activity patterns are analyzed after the experiments to investigate how the brain works. Alternatively, it is also possible to extract the activity patterns in real … Continue reading →

Posted in Brain machine interface, Calcium Imaging, closed-loop, Data analysis, electrophysiology, Imaging, machine learning, neuroscience | Tagged , , , , , | Leave a comment

Two random but interesting papers on neurophysiology with behavior

Posted on October 15, 2023 by P.T.R. Rupprecht

Bagur, Bourg et al. (2022) from the Bathellier Lab in Paris make the interesting finding that the auditory code is represented as temporal sequences of neuronal activity in early auditory processing stages and as spatial patterns in auditory cortex. I … Continue reading →

Posted in Brain machine interface, closed-loop, Data analysis, electrophysiology, hippocampus, machine learning, Network analysis, Neuronal activity, neuroscience, Reviews | Tagged , , , , | Leave a comment