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Monthly Archives: February 2026
CascadeTorch: a PyTorch version of Cascade for spike inference
I’m glad to share a PyTorch-based implementation of spike inference from calcium imaging data: CascadeTorch, now available on GitHub. The original Cascade repository remains fully supported. This post explains why I re-implemented Cascade in Torch, and what this means for … Continue reading
A clearing method for large human FFPE tissue blocks
During the lockdown in 2020, I was forced to stop my own experiments in the lab. This is when I turned to computational and analysis side-projects that since then have become quite central to my own work and approach to … Continue reading
Posted in Data analysis, Imaging, Microscopy, neuroscience
Tagged Dopamin, FFPE, Human brain, Light-sheet microscopy, Microscopy, Neuropathology, Pathology, Substantia nigra
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Hippocampal neuron and astrocyte responses to noradrenaline and natural arousal
Over the past few years, I worked with Sian Duss, a very skilled and talented PhD student in the lab of Johannes Bohacek, to dissect the role of noradrenaline release in the hippocampus. I’m very excited that the manuscript describing … Continue reading
A blog about neurophysiology 